use crate::error::OpossumError; use ndarray::Array1; use ndarray_interp::Interp1DBuilder; use ndarray_interp::Interp1DStrategy::Linear; use std::fmt::Display; use std::ops::Range; use uom::fmt::DisplayStyle::Abbreviation; use uom::num_traits::Zero; use uom::si::length::meter; use uom::si::{f64::Length, length::nanometer}; type Result<T> = std::result::Result<T, OpossumError>; #[derive(Clone)] pub struct Spectrum { data: Array1<f64>, // data in 1/meters lambdas: Array1<f64>, // wavelength in meters } impl Spectrum { pub fn new(range: Range<Length>, resolution: Length) -> Result<Self> { if resolution <= Length::zero() { return Err(OpossumError::Spectrum("resolution must be positive".into())); } if range.start >= range.end { return Err(OpossumError::Spectrum( "wavelength range must be in ascending order".into(), )); } if range.start <= Length::zero() || range.end <= Length::zero() { return Err(OpossumError::Spectrum( "wavelength range limits must both be positive".into(), )); } let l = Array1::range( range.start.get::<meter>(), range.end.get::<meter>(), resolution.get::<meter>(), ); let length = l.len(); Ok(Self { lambdas: l, data: Array1::zeros(length), }) } pub fn set_single_peak(&mut self, wavelength: Length, value: f64) -> Result<()> { let spectrum_range = self.lambdas.first().unwrap()..self.lambdas.last().unwrap(); if !spectrum_range.contains(&&wavelength.get::<meter>()) { return Err(OpossumError::Spectrum( "wavelength is not in spectrum range".into(), )); } if value < 0.0 { return Err(OpossumError::Spectrum("energy must be positive".into())); } let wavelength_in_meters = wavelength.get::<meter>(); let idx = self .lambdas .clone() .into_iter() .position(|w| w >= wavelength_in_meters); if let Some(idx) = idx { if idx == 0 { let delta = self.lambdas.get(1).unwrap() - self.lambdas.get(0).unwrap(); self.data[0] = value / delta; } else { let lower_lambda = self.lambdas.get(idx - 1).unwrap(); let upper_lambda = self.lambdas.get(idx).unwrap(); let delta = upper_lambda - lower_lambda; self.data[idx - 1] = value * (1.0 - (wavelength_in_meters - lower_lambda) / delta) / delta; self.data[idx] = value * (wavelength_in_meters - lower_lambda) / delta / delta; } Ok(()) } else { Err(OpossumError::Spectrum("insertion point not found".into())) } } pub fn total_energy(&self) -> f64 { let mut total_energy = 0.0; for data in self.data.iter().enumerate() { if data.0 < self.data.len() - 1 { let delta = self.lambdas.get(data.0 + 1).unwrap() - self.lambdas.get(data.0).unwrap(); total_energy += *data.1 * delta; } } total_energy } pub fn scale_vertical(&mut self, factor: f64) -> Result<()> { if factor < 0.0 { return Err(OpossumError::Spectrum( "scaling factor mus be >= 0.0".into(), )); } self.data = &self.data * factor; Ok(()) } fn enclosing_interval(&self, x_lower: f64, x_upper: f64) -> Vec<usize> { let mut res = self .clone() .lambdas .into_iter() .enumerate() .filter(|x| x.1 < x_upper && x.1 > x_lower) .map(|x| x.0) .collect::<Vec<usize>>(); if res.is_empty() { let mut lower_idx = self .clone() .lambdas .into_iter() .position(|x| x >= x_lower) .unwrap(); let upper_idx = self .clone() .lambdas .into_iter() .position(|x| x >= x_upper) .unwrap(); if lower_idx > 0 && self.lambdas[lower_idx] > x_lower { lower_idx -= 1; } res = vec![lower_idx, upper_idx]; } else { let first = *res.first().unwrap(); let last = *res.last().unwrap(); if first > 0 { res.insert(0, first - 1); } if last < self.lambdas.len() - 1 { res.push(last + 1) } } res } pub fn resample(&mut self, spectrum: &Spectrum) -> Result<()> { let _data = spectrum.data.clone(); let _x = spectrum.lambdas.clone(); let max_idx = self.data.len() - 1; for x in self.data.iter_mut().enumerate().filter(|x| x.0 < max_idx) { let lower_bound = *self.lambdas.get(x.0).unwrap(); let upper_bound = *self.lambdas.get(x.0 + 1).unwrap(); let interval = spectrum.enclosing_interval(lower_bound, upper_bound); } Ok(()) } pub fn filter(&mut self, _spectrum: &Spectrum) -> Result<()> { Ok(()) } } impl Display for Spectrum { fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { let fmt_length = Length::format_args(nanometer, Abbreviation); for value in self.data.iter().enumerate() { write!( f, "{:7.2} -> {}\n", fmt_length.with(Length::new::<meter>(self.lambdas[value.0])), *value.1 ) .unwrap(); } write!(f, "\nTotal energy: {}", self.total_energy()) } } fn calc_ratio(bucket_left: f64, bucket_right: f64, source_left: f64, source_right: f64) -> f64 { if bucket_left < source_left && bucket_right > source_left && bucket_right < source_right { // bucket is left partly outside source return (bucket_right - source_left) / (source_right - source_left); } if bucket_left <= source_left && bucket_right >= source_right { // bucket contains source return 1.0; } if bucket_left > source_left && bucket_right < source_right { // bucket is part of source return (bucket_right - bucket_left) / (source_right - source_left); } if bucket_left > source_left && bucket_left < source_right && bucket_right > source_right { // bucket is right partly outside source return (source_right - bucket_left) / (source_right - source_left); } return 0.0; } #[cfg(test)] mod test { use super::*; use ndarray::array; #[test] fn new() { let s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(4.0), Length::new::<meter>(0.5), ); assert_eq!(s.is_ok(), true); assert_eq!( s.as_ref().unwrap().lambdas, array![1.0, 1.5, 2.0, 2.5, 3.0, 3.5] ); assert_eq!(s.unwrap().data, array![0.0, 0.0, 0.0, 0.0, 0.0, 0.0]); } #[test] fn new_negative_resolution() { let s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(4.0), Length::new::<meter>(-0.5), ); assert_eq!(s.is_ok(), false); } #[test] fn new_wrong_range() { let s = Spectrum::new( Length::new::<meter>(4.0)..Length::new::<meter>(1.0), Length::new::<meter>(0.5), ); assert_eq!(s.is_ok(), false); } #[test] fn new_negative_range() { let s = Spectrum::new( Length::new::<meter>(-1.0)..Length::new::<meter>(4.0), Length::new::<meter>(0.5), ); assert_eq!(s.is_ok(), false); } #[test] fn set_single_peak() { let mut s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(4.0), Length::new::<meter>(0.5), ) .unwrap(); assert_eq!( s.set_single_peak(Length::new::<meter>(2.0), 1.0).is_ok(), true ); assert_eq!(s.data[2], 2.0); } #[test] fn set_single_peak_interpolated() { let mut s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(4.0), Length::new::<meter>(0.5), ) .unwrap(); assert_eq!( s.set_single_peak(Length::new::<meter>(2.25), 1.0).is_ok(), true ); assert_eq!(s.data[2], 1.0); assert_eq!(s.data[3], 1.0); } #[test] fn set_single_peak_lower_bound() { let mut s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(4.0), Length::new::<meter>(0.5), ) .unwrap(); assert_eq!( s.set_single_peak(Length::new::<meter>(1.0), 1.0).is_ok(), true ); assert_eq!(s.data[0], 2.0); } #[test] fn set_single_peak_out_of_limit() { let mut s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(4.0), Length::new::<meter>(1.0), ) .unwrap(); assert_eq!( s.set_single_peak(Length::new::<meter>(0.5), 1.0).is_ok(), false ); assert_eq!( s.set_single_peak(Length::new::<meter>(4.0), 1.0).is_ok(), false ); } #[test] fn set_single_peak_negative_energy() { let mut s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(4.0), Length::new::<meter>(1.0), ) .unwrap(); assert_eq!( s.set_single_peak(Length::new::<meter>(1.5), -1.0).is_ok(), false ); } #[test] fn total_energy() { let mut s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(4.0), Length::new::<meter>(0.5), ) .unwrap(); s.set_single_peak(Length::new::<meter>(2.0), 1.0).unwrap(); assert_eq!(s.total_energy(), 1.0); } #[test] fn scale_vertical() { let mut s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); s.set_single_peak(Length::new::<meter>(2.5), 1.0).unwrap(); assert_eq!(s.scale_vertical(0.5).is_ok(), true); assert_eq!(s.data, array![0.0, 0.25, 0.25, 0.0]); } #[test] fn scale_vertical_negative() { let mut s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); s.set_single_peak(Length::new::<meter>(2.5), 1.0).unwrap(); assert_eq!(s.scale_vertical(-0.5).is_ok(), false); } #[test] fn enclosing_interval() { let s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); let v = s.enclosing_interval(2.1, 3.9); let l = v.into_iter().map(|i| s.lambdas[i]).collect::<Vec<f64>>(); assert_eq!(l, vec![2.0, 3.0, 4.0]); } #[test] fn enclosing_interval_exact() { let s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); let v = s.enclosing_interval(2.0, 4.0); let l = v.into_iter().map(|i| s.lambdas[i]).collect::<Vec<f64>>(); assert_eq!(l, vec![2.0, 3.0, 4.0]); } #[test] fn enclosing_interval_upper_bound() { let s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); let v = s.enclosing_interval(3.0, 5.0); let l = v.into_iter().map(|i| s.lambdas[i]).collect::<Vec<f64>>(); assert_eq!(l, vec![3.0, 4.0]); // ranges are exclusive upper bound ! } #[test] fn enclosing_interval_lower_bound() { let s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); let v = s.enclosing_interval(1.0, 3.0); let l = v.into_iter().map(|i| s.lambdas[i]).collect::<Vec<f64>>(); assert_eq!(l, vec![1.0, 2.0, 3.0]); } #[test] fn enclosing_interval_small_range() { let s = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); let v = s.enclosing_interval(2.6, 2.9); let l = v.into_iter().map(|i| s.lambdas[i]).collect::<Vec<f64>>(); assert_eq!(l, vec![2.0, 3.0]); } #[test] fn calc_ratio_test() { assert_eq!(calc_ratio(1.0,2.0,3.0,4.0),0.0); // bucket completely outside assert_eq!(calc_ratio(1.0, 4.0, 2.0, 3.0),1.0); // bucket contains source assert_eq!(calc_ratio(2.0,3.0,0.0,4.0),0.25); // bucket is part of source assert_eq!(calc_ratio(0.0,2.0,1.0,3.0),0.5); // bucket is left outside source assert_eq!(calc_ratio(0.0,2.0,1.0,2.0),1.0); // bucket is left outside source (matching) assert_eq!(calc_ratio(2.0,4.0, 1.0,3.0),0.5); // bucket is right outside source assert_eq!(calc_ratio(1.0,4.0, 1.0,3.0),1.0); // bucket is right outside source (matching) assert_eq!(calc_ratio(1.0,2.0,1.0,2.0), 1.0); // bucket matches source } #[test] fn resample() { let mut s1 = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); s1.set_single_peak(Length::new::<meter>(2.0), 1.0).unwrap(); let s2 = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); s1.resample(&s2).unwrap(); assert_eq!(s1.data, s2.data); } #[test] fn resample_interp() { let mut s1 = Spectrum::new( Length::new::<meter>(1.0)..Length::new::<meter>(5.0), Length::new::<meter>(1.0), ) .unwrap(); let mut s2 = Spectrum::new( Length::new::<meter>(0.9)..Length::new::<meter>(6.0), Length::new::<meter>(0.5), ) .unwrap(); s2.set_single_peak(Length::new::<meter>(2.0), 1.0).unwrap(); println!("s2: {}", s2); s1.resample(&s2).unwrap(); assert_eq!(s1.data, array![0.0, 0.5, 0.5, 0.0]); } }